Scaffold Ga0334985_0012818

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0012818
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6610
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006988	Metagenome	360	Y
F063702	Metagenome	129	Y
F090083	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0012818_2008_2508	F090083	AGCAG	MATDLTIQVTGVKEAVKYLNQVEPGYRKAYIANMKEIARPMTDAMKSNYDDMRFPSGTRRNWSPGGRPIFPLSASKAVKGVGVRVNNKKKGAAFSVMQKNPAAAIFDIAGRANVNPLATAFSTKFGRSASRVIWPVFEAKIADLTTEVQKVVEGVMAEANKNFKVF
Ga0334985_0012818_6213_6608	F006988	GGAG	MTSRPYTGNKDAVHAAKREGTKVFVDYCCYLFGVTNLGIFNDRNMVGTTPPKKSVHATWRAVDLKGTPEQRFKLIDFLYTHRDILCIEEIHDYAGTYKNNAKGWGAGYRCDRDEWRVYDKNTIGSKGAQWVH
Ga0334985_0012818_994_1170	F063702	AGGA	MKYTIVSDKIGTPGTEFVPGAGTNIEALLAHGFIESDEIVSDSTAPKSAKTKAPQKKD