NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0012124

Scaffold Ga0334985_0012124


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0012124 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6812
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026554Metagenome / Metatranscriptome197Y
F027850Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0012124_1628_1972F026554N/AMKLDINEMYHNYIVRVVIFGLFTYKRIIRQPNVYKQSVFSFVKKRLAWKINLTIDTGPQMSKDEEREIVLNEILEGVESDYLTKVTVTFTTPLREVTIEVDLKDEDKYQNFLYL
Ga0334985_0012124_4275_5129F027850N/AMRGFRIYNKVELFNSIDKIEVEKINGQVITKYGGRVTQVANVSERYEVFDIAKYLKEKIELIEQNFTISKYQLQIRKGQQYLQLISDSVNIGGTEFYKSFYILNSTDKSRRLSFYAGLHSQNYYYIGANNVGLSRKHLTGVNVAAEDASKGLTGETFDEQIEALQNIVGHRIQFSKIRQVILGDKEEIPQVNHRKFDAFKNLIRYADSDRLITLTKEQRSQLYTDSERMKEVKEDFYLDAFWVFGAYMRLFNRQDSHIIKNETDRIMKITQWAVRNNVLEALGI
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