NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0011694

Scaffold Ga0334985_0011694


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0011694 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6946
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021755Metagenome / Metatranscriptome217Y
F028487Metagenome191Y
F044492Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0011694_1222_1473F044492N/AMNNSENLMTVSINRKPSFTEIWHEGSVNYGGKEFMFWLINPRGLDEQGREYEMEVRWWFKQVPKEIRAMSEQIIKDFKENKHD
Ga0334985_0011694_3053_3259F028487N/AMYNSEILDHLISKYGIDDVIKFCDMESEKNALLAQSVDEDKQHYPEPNEWRFERDWWSESGKQLKQRI
Ga0334985_0011694_977_1225F021755N/AMKRTILKLHDKKHIDLIDHNVKECIHKNENYEVEYKGKTMTLTPDELKTKCVGRQYITKPKYGDKPYHLLTYLWEPTKLLNK
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