NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0011385

Scaffold Ga0334985_0011385


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0011385 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7040
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000714Metagenome / Metatranscriptome924Y
F003663Metagenome / Metatranscriptome474Y
F007470Metagenome / Metatranscriptome350Y
F009530Metagenome / Metatranscriptome316Y
F066779Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0011385_2_133F007470GGAGMDYQNGFEDGVKFAREVIIANIRLWAEDSDDGQAYDDIADRIEF
Ga0334985_0011385_347_844F000714N/AVEHATIQPTQTKEEKMETTEHLVPDTYNTDLLVTYKKINGFSNPEYITDKVRNIEWELHNARTNSKAVSTMQSKIDSVKDIITDAYADSGDQDTLRAIAEALDIELVKEVEWTASIEVSGTYSYNILDSDYEPDLTDEITDAIYADSHNGNIEITDQEVCNVRES
Ga0334985_0011385_3864_4124F003663N/AMELLEATKDSVFDDEIMGLAGELHTRRNELSDEIFAKYLFMYSSAVASKVADSVTRVLLTDEQMSDLCDTIAEMDNLTETILEGDN
Ga0334985_0011385_6154_6321F009530AGAAGMTITYSIWQGSRLLSIDNVAHEIKAIDHLIATLNASELGKKTKFTANVMTIKVGE
Ga0334985_0011385_6506_6733F066779AGGAGMFSLKYKIEYNTDPAYPLSKNFGTCLGVLMNTERDANEYLDLLALRGTILEVELVELENYTPSNRKVYATTRSWE
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