NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0007193

Scaffold Ga0334985_0007193


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0007193 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8961
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015337Metagenome / Metatranscriptome255Y
F021980Metagenome / Metatranscriptome216Y
F024553Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0007193_3051_3407F024553N/AMAKLNQEIQKVIDNASNVLYREEIYINSRHEYDYHKLEAIKNVTVHTLYFSEDEEWAENMRKQVAMQLVDNGDGVEIIGACNKKVLNYLEAEQLHILLRLASTHCVYQIAEPAPKKKF
Ga0334985_0007193_7032_7151F021980N/AMNKFECSECGTKYSSPKTTPPPGIKWSDGHVCTPKPINK
Ga0334985_0007193_7603_7749F015337N/AMKKIKMEPTEFYHFRKLAFAISLAFGCTMTHGVYIVEASIDQLEKLGY
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