Scaffold Ga0334985

Basic Information
Taxon OID	3300034018 Open in IMG/M
Scaffold ID	Ga0334985_0003568 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034018 Open in IMG/M

Scaffold ID

Ga0334985_0003568 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12599
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (43.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12599

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (43.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F046374	Metagenome / Metatranscriptome	151	N
F066790	Metagenome / Metatranscriptome	126	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0003568_149_310	F066790	N/A	MLSDLMQRVRDMFKPYTLEDFICDADPKDYKDIQRLEAVWHNYQDRKLFNNCY
Ga0334985_0003568_3088_3348	F046374	GAG	MAKTFGSLKSNKLDMLDKLTMGKFAGCRICDIIADDFEYLIWLNKQGFVNFTAPVMSDLLARAGFKEAEEHYKNEIEPWENEDVPF
Ga0334985_0003568_4405_4734	F038245	AGGA	MKIYFGNANEDLFSDGLFALGDNQFYYGVEHGTNAGGLDEVVIFDGCKRKLPIHIQAIPELIAALQEVQKVDEAVKRAQELTERAESKTKGYATKLWHDHFEVDFDTAE
Ga0334985_0003568_4738_5130	F045760	GGAG	MSSASKSKQAYAALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPNSKTVWSHDNIRVAKLFKEFTGRASADLFSSNPKVQAAALAYRPDGDKLKVIEGKVNFSLGARAHDSKGNLVWK
Ga0334985_0003568_5121_5384	F078719	AGG	MEIIEIYILFALTTGISSCILFLAPAINMAKELEIQNSFTENTWLSYATYITISTIFAPFTVLPIFIPSFAVRYKLGLRRAVLESQT
Ga0334985_0003568_5456_5728	F099303	N/A	MNFLEFTYTKADGTQSKRAVVPLVNPTKFVEGIDVSQMSEDEFAVFCREFSALKSAQHEQTMAVLEQFDLKHNYRRFIPEQMSDITTDHV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334985_0003568

Overview

Ecosystem & Geography

Associated Families

Sequences