NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0002901

Scaffold Ga0334985_0002901


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0002901 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13812
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031023Metagenome / Metatranscriptome183Y
F041637Metagenome / Metatranscriptome159Y
F072295Metagenome121N
F100534Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0002901_13220_13540F072295AGGAGMAVTLGRDGGAPTGGNGATGVIAVTWNEEATAIDVSHRGIVNPSGISYKAATGGFITRTAEIECLDATAVISSLAGAGTGYIVTNVSENRPLDGPVTFTLTAKKTS
Ga0334985_0002901_2154_2426F031023GAGGMLIDRKLVATVLVCLAVGWWLGSSPASPINPTPQRPVLQAVGRLARIAARLGLWAAMAAEPAPQADGRQLVHAPSVDADGHRVVDHGEGW
Ga0334985_0002901_4187_4546F041637AGGMTPDQLQSAVLALIAGARLKSAGGLTVSEFGSLTVEVIRLAVAGLDTINTLDGAAKKSWALSCVGTLFDAVADSCVPFVAKPVWWIVRPAVRTLVLSAAGGALEQILTLTRAAAPEPVA
Ga0334985_0002901_4548_5060F100534GGAGMPDSLDGIVSTTTSLTQTQTGTVGSSTRAVSVSSAYPLNSVSGPISDQLWVSNRSLAVGASETLDLLSLADTIQGATGIQTMRQVRLVRIANSETVTGPRIVVGPSGTNGWGRVAGEVGPGGELLAVQQTHAWGVTSTERAVTIRATGPTGSVAYSIVIAGTATTGPAGY
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