NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0002503

Scaffold Ga0334985_0002503


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0002503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14809
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034165Metagenome / Metatranscriptome175Y
F098561Metagenome103Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0002503_13323_13688F098561AGGAGVAITLGKDCSIVLDGGFIASARNVTLTESARTIDVNPYGSRYAATYNTGYDCTVSVELNDVAGLGTAFQKMHSGGTFTVSGGAAGFSFLAVMTGISETDPIDGIASFVLEGKMTDPRLAR
Ga0334985_0002503_14035_14367F034165GAGGMPIGSVEITLGKDVTITGVANARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSIGGTFTISGTQTGNATYICTNIGQSQPLDGIITFTVSGSRTVSA
Ga0334985_0002503_16_408F102439N/AMGEVQRSLLSDDELPPPKGQKRRMPERLSPQMRKWLTKLARVGARITWTIELLYDPSKGGQGELCQRARAGDHTLVLDTVREVEHRAATLAEDIEVFMTPPQKLPAEPGHPLRVEAMARRQLAKMHIFDG

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