Scaffold Ga0334985_0002503

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0002503
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14809
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0002503_13323_13688	F098561	AGGAG	VAITLGKDCSIVLDGGFIASARNVTLTESARTIDVNPYGSRYAATYNTGYDCTVSVELNDVAGLGTAFQKMHSGGTFTVSGGAAGFSFLAVMTGISETDPIDGIASFVLEGKMTDPRLAR
Ga0334985_0002503_14035_14367	F034165	GAGG	MPIGSVEITLGKDVTITGVANARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSIGGTFTISGTQTGNATYICTNIGQSQPLDGIITFTVSGSRTVSA
Ga0334985_0002503_16_408	F102439	N/A	MGEVQRSLLSDDELPPPKGQKRRMPERLSPQMRKWLTKLARVGARITWTIELLYDPSKGGQGELCQRARAGDHTLVLDTVREVEHRAATLAEDIEVFMTPPQKLPAEPGHPLRVEAMARRQLAKMHIFDG