Scaffold Ga0334985

Basic Information
Taxon OID	3300034018 Open in IMG/M
Scaffold ID	Ga0334985_0002124 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034018 Open in IMG/M

Scaffold ID

Ga0334985_0002124 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15915
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (76.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15915

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (76.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0002124_1849_2034	F066777	AGGCGG	MGELTFIKDGYATTIHDDGNITVVAAQYCDQCKNWQTGLGGFNVRDVAGEVVMWLCAECR
Ga0334985_0002124_2425_3033	F007029	AGGAG	MGFLDNYEDVNSRIKRFRSEHPTGRLVAIIEDMDLTKGTILIRAEAYREYEDHVPSAVDYAYGNVASLPNNMKRWLVEDTVTSAYGRVIGLLSPSDAGRPTRQDMEKVEVLPADSDPWSTKAAIEDIPTMATAITDIASNLGGQLVAEAPQCSHGHMVWAEGTAKTTGKPWAAYKCTEKNRANQCTPRWYVLASDGKWKPQV
Ga0334985_0002124_3033_3182	F023592	N/A	MDLLIGLAACGIGFMFMVIGYSIGYRQGHGEGFIRGRAIAQALKDKELI
Ga0334985_0002124_5639_6886	F027413	AGGA	VSAWLPEWRITVGTTVYTNVLSVNMATGRDDIDLQCNAGYARMEIVNIDNTAFDIDVTDILTLELKNSSGTYVPVFGGTVSDFGISVRSPEEVGFITIGNILAVGSLAKLTKALFPDALPKTEDGNQIFDILNELLINSWFEVAPALQWQDYDPTTTWANAENVGLGEIDQPGLYEMISRSADPFSSYNLCAQIAQSALGNIYEDKAGRVCYADADHRTAYLSANGYTTISANYAIPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDAASIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPRDQLQAITFRLDNSELPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPPSLIWTGVNATLEWENAYGGLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334985_0002124

Overview

Ecosystem & Geography

Associated Families

Sequences