Scaffold Ga0334985_0000378

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0000378
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33751
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (80.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F021516	Metagenome	218	Y
F102618	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0000378_18198_18500	F002540	GGAGG	MPAYEATPAELEQYGSKLTIWQQLALLQAWSPLIGYGQRFINEADPYKRSIIVSDASEWLASKTNAQADDQLVRLLGDLLKTKQGEALVRWCLLQVEAVR
Ga0334985_0000378_20576_20818	F003377	GGAGG	VTDQAKETLFGIIERWGFPTLVAIACGWVLRADVLLPLVEEHRAFVKSLSETQREISKAVSEQTRLLYALQPRATEQQEN
Ga0334985_0000378_29060_29299	F021516	GGAG	MPKIVFTRAWRGYRKGQVAELPGGISTQLLAQRVAVEDNQPSLIETAALEHDVETADATPKRRGRRAVSKPDSTDAASR
Ga0334985_0000378_8430_8672	F102618	AGGAG	MMTNESSPAENEYLAAVAGLSEQTLSPAFKKSEPAVGDFVSGRTAGRYWSGRVEWVNDRGEICVNTDGSWVYVPMADITH