Scaffold Ga0334985_0000345

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0000345
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34937
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F034061	Metagenome	175	N
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0000345_13263_14219	F070850	AGG	MNEQSTSTTTQSITPSTGVVLLAFGKPQYYWAAYNLAFSIRKHSPNVKITVLFDDPIKALSHCHDLMQYINHIGHIALEDIYTNKKLDPGKVKVNLYKYLPYDRNLYLDVDAIAVKDIQPMIDELTQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNNPIPIKDLRMKWGGGQPDELYMNVALAIHGIDPALKAYTKNDSSEGGMIHFAMQRGLSFQDITENYYLQSYYGGAGFTPRFYIDWLDRMLAADFKAIGKRHIYLISRIAQNKYADGKR
Ga0334985_0000345_21367_21993	F025680	N/A	MKYIKGLKGLLRSFSGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGGEMELILTEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWIIRDDENPDIVNSDIHNFKLELFEQLSKGGAKDFFSGLGIDPLMPLLSMSPEDFQTLWEYNLVQQRNLKESLFRLSSHRESGRKKQATT
Ga0334985_0000345_22397_22723	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGIVEAETEFTVWLQHNATQKIMQFTATSDAEGYITIEGIQLDPLQGYTIWVTIDGVQQDITVDGDIYKCLSFSAVSVGLSPVVIP
Ga0334985_0000345_30321_30884	F033329	N/A	MSRDIYNSIEAINASSIKRHYTGSIQYAAGALERGAEFHRNLLETEPKDMPPNAKLIYDTIIKHPMLRLIFEKSAKEITFIKSIDIDGRKVAAKGILDLHCPMYSINADIKTTSCTNLRAFASDMTKHYNHIQAVWYSYLTGFDPANFYYIGVPNKFKGELFIHRHTADEIRTAETLIRDYLVHRGL
Ga0334985_0000345_32079_32735	F065376	N/A	MNAVNIENISEFYKSLNSTEVLRAQSMIEGAPQAIEDKLSYDMSAESIKAANDAIKHIETNRKMVTSPLDVYKKSVMDVERDATAPLKAYIEQRKAMMIDYSNDLERKKAEADAKIAQEAADALMSASTSDVSNIFATFTDATTTTTLELDHTKNIRITKKAEIVGEVDWMTLLWTLMQAEMFDVSELLRKLPKAMEITNIAEIRGIEIVERKTQAIR
Ga0334985_0000345_6054_6515	F024717	N/A	MATPKEISERIDGLFSEWSSGFTPLYFAVLDMRREMYIRIFGTGKNGGKNQAGDSLPTVPYSPAYAKLKAKNGRPPLELTGFLKRSFATDQTTVILEGFDTAIYTVADEAGKVAGLEKLYGTIFKPTKEEQDRMLQLHADLLVEQISNQISKP
Ga0334985_0000345_6515_7561	F034061	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNASNVDLAVGAAKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMNTPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMVPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0334985_0000345_693_1169	F060610	N/A	MDDGRDSTYTTLDEGCVVGIGCKVHTHHHVIKLESQVVYKSMEKFTIFGKQYCTNQWGQTFEIAADEPVPEPKPMQQFYASDTIQPSTSAFLLAPKPEAKIIIKPRTEFTEYKPTMDAPIMGMLLTFTIYLTVQWAWSSMGAWNNLYSELSACLRSSS
Ga0334985_0000345_9844_10755	F008936	N/A	MASFEELVKNKIKLLENVPEELATAAERAQRDAWRKLGPLLAEMDVDADGNIAQTEDNIRRIGLITEELNKVLAGGEYRDAVQSFLASIDESVQLTDEIAKKIDASFQPDKVQKQLLNISKQNAINAFFGSGLRERVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDANDGRLLANVRNVAGTAQAIADRSYAAAVNLELGVEYYQYLGGEIATTRPFCAHREGQIFHRGEIEAWGDGKNSAGINDIRNGTWDGRIEGTDSKSIFTFLGGWGPCRHFLVPVIKQRVPASVIARAKAEGFT