Scaffold Ga0334985

Basic Information
Taxon OID	3300034018 Open in IMG/M
Scaffold ID	Ga0334985_0000308 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034018 Open in IMG/M

Scaffold ID

Ga0334985_0000308 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36322
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (12.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

36322

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (12.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F028489	Metagenome / Metatranscriptome	191	Y
F053077	Metagenome / Metatranscriptome	141	Y
F091487	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0000308_1680_2159	F000716	N/A	MEKLKQDVKNYQLSAGRMYMQYETDGYSQYQNYLYKRALYGLDALTQQELATMCSKKKQRIVNVYKRAQVVLNKFKQQVTIQYSNFIFKTLFPKSPLTELLIADTETDDKFKNTLTFKDLGINKEQIITIFMAEGILPKNFLSLDKDPNQLPRLKNASK
Ga0334985_0000308_27232_27408	F091487	AGTAG	MHPVAFRKAMIEAYMVGFAAAIEAGLKDYPTKQEARDWFDNEYGQQESEECDCCEEDD
Ga0334985_0000308_3758_4495	F028489	N/A	MKMIGKELKIKHTMNYSTFSVLPMNRGIDSKHVQKMITSIRKMGVLRCVIACTTNIIEGEDKTYIIDGQHLATALEREDRMIPYVEIEIESEEDLIEKMAYLNNSSKSWDLMNYVNAWKMIRPDYMKLFKWKNMYDIEVTMLAMLGVNSPGLKHGTSVIKTGNFTITNPNAEAMCKAFNDIFLKIGMSDRAVKFQFLTAFMQAYGNYNHTKVMANLDRHLKTVKLMSTGDETGNYIRKKIFNLPK
Ga0334985_0000308_750_1019	F053077	N/A	MLYQLPNGKVIFLTIEQYLDLTDEDEQYLMSLDAGEYALNPFLESAVLQNTKEKYYDFDYLPDDESCDDIVSDDIPFDDIIDLTGPLDT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334985_0000308

Overview

Ecosystem & Geography

Associated Families

Sequences