Scaffold Ga0334985_0000158

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0000158
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48591
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (51.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F063494	Metagenome / Metatranscriptome	129	N
F067530	Metagenome / Metatranscriptome	125	Y
F078232	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0000158_10272_10469	F063494	N/A	VNNPTLRANTITQALTQTAPKHLSPEATYRFYERLGMICGDKPATPEQLQTALLEANEYDLNSED
Ga0334985_0000158_3084_3302	F067530	N/A	MPQTFTLNLDPANANALITALEVARRQGDFQVARTAVAIISELIRQDAEFKKANPVTTQPAPANAGGEPTQP
Ga0334985_0000158_36123_37211	F034904	GAG	MRKTLAQAKNSTIPQAVGLATCDDRFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLTADAGKRVLLQGLDPNGHPIRTLDTVTGEYVWGEYVTLPNPAVTAYVQTVNLFKQPGLTGAQKPLTQGSLTILAYNPTTLLQTQIAVWGPSEQNPEYRRTYLIGMPEVCGGTSGCNAEAQNDCIDHGDGCVPADEACTNTVVEAIVRLDFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERTVVNVQVWGSAKIQYRFGGFI
Ga0334985_0000158_41806_43845	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKGLTFDDPDVVYQGGYYNRAVRDSFLNGFFQGCGTYVSDSGAPYLFASISGKVYQIDIQNGFKVTDLTPINFTFQVLTRGRVSNVATYVCGVPHGLSPGMVVRLPEPPGAFFPEGFFGDFIVETVPSPTTFTTYSPGIDAGPLLGPLFNAYQMATNDPQASHVYFQQAENWLVIQDRQNQPYLYNGSTLRRATGDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPGYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNQESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVMDFDLVSGMGRKLPPAWEGIWTGVDVFQMVTVRVKRTERCFMFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGSIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA
Ga0334985_0000158_5664_6068	F078232	AGGAGG	MPALTSQEIASLSGCFDCLSPGVKDSFMLVLLQQIQAASPGAPLTTTSTGGLRTATATSAANPARRKFVIQNQKSEHLHVKFGTGATTTDYHYVLQSAATVGISGSSLTFDGYTGAISVAPVTGNPSYTFAEFV
Ga0334985_0000158_6474_8057	F028149	AGGAG	MASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGASCTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAAAAITAASLGRLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNASLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNATATAGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQSYNSADPVCPSVIQFTAVINDADPARYVIGTTGIMCDDNIVANAGISSATPAALVIALQAAWDAEFGAGQGTWSVVSGTLIQLAGSSCTNVTLEFAI