NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334985_0000158

Scaffold Ga0334985_0000158


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0000158 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48591
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (51.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028149Metagenome / Metatranscriptome192N
F034904Metagenome / Metatranscriptome173N
F042808Metagenome / Metatranscriptome157N
F063494Metagenome / Metatranscriptome129N
F067530Metagenome / Metatranscriptome125Y
F078232Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0000158_10272_10469F063494N/AVNNPTLRANTITQALTQTAPKHLSPEATYRFYERLGMICGDKPATPEQLQTALLEANEYDLNSED
Ga0334985_0000158_3084_3302F067530N/AMPQTFTLNLDPANANALITALEVARRQGDFQVARTAVAIISELIRQDAEFKKANPVTTQPAPANAGGEPTQP
Ga0334985_0000158_36123_37211F034904GAGMRKTLAQAKNSTIPQAVGLATCDDRFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLTADAGKRVLLQGLDPNGHPIRTLDTVTGEYVWGEYVTLPNPAVTAYVQTVNLFKQPGLTGAQKPLTQGSLTILAYNPTTLLQTQIAVWGPSEQNPEYRRTYLIGMPEVCGGTSGCNAEAQNDCIDHGDGCVPADEACTNTVVEAIVRLDFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERTVVNVQVWGSAKIQYRFGGFI
Ga0334985_0000158_41806_43845F042808N/AMVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKGLTFDDPDVVYQGGYYNRAVRDSFLNGFFQGCGTYVSDSGAPYLFASISGKVYQIDIQNGFKVTDLTPINFTFQVLTRGRVSNVATYVCGVPHGLSPGMVVRLPEPPGAFFPEGFFGDFIVETVPSPTTFTTYSPGIDAGPLLGPLFNAYQMATNDPQASHVYFQQAENWLVIQDRQNQPYLYNGSTLRRATGDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPGYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNQESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVMDFDLVSGMGRKLPPAWEGIWTGVDVFQMVTVRVKRTERCFMFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGSIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA
Ga0334985_0000158_5664_6068F078232AGGAGGMPALTSQEIASLSGCFDCLSPGVKDSFMLVLLQQIQAASPGAPLTTTSTGGLRTATATSAANPARRKFVIQNQKSEHLHVKFGTGATTTDYHYVLQSAATVGISGSSLTFDGYTGAISVAPVTGNPSYTFAEFV
Ga0334985_0000158_6474_8057F028149AGGAGMASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGASCTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAAAAITAASLGRLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNASLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNATATAGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQSYNSADPVCPSVIQFTAVINDADPARYVIGTTGIMCDDNIVANAGISSATPAALVIALQAAWDAEFGAGQGTWSVVSGTLIQLAGSSCTNVTLEFAI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.