Scaffold Ga0334985_0000066

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0000066
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64603
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (80.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023296	Metagenome / Metatranscriptome	210	Y
F034897	Metagenome / Metatranscriptome	173	Y
F045610	Metagenome	152	Y
F067395	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0000066_24318_24503	F045610	AGGAG	MKHEDIKKDMPMMAKVAAKAVKGHEKRMHKMAKGGVTRADGCVSKGHTKGKMIAMKSGGM
Ga0334985_0000066_27286_27468	F034897	AGGAG	MGYKKAADGVAKKGKTDTKIYPNSGPSVVDKGPKASTSSLNKNMKAMGRNLAKVANQRGR
Ga0334985_0000066_27468_27734	F023296	GAGG	MAKYSMKKGGKEVGPAEVYAEPHTMSGKKVTAAESSVVKPGRNGINEMNVSVAGVSKGNYAPINPYGVGVMRGYGAATKGRKISGKMG
Ga0334985_0000066_46201_46614	F067395	N/A	MKLTVQPVGIQYVHKIWPLVEELFEKANKHDTGDYTLDQIRGLLATGSWVLLVATDEENVIHGAASVSFYNMPNYRVGFITAMAGKAIVNEDVYGQVCSFIKANGATRVQCAARESAARLYKQVGMEERHIIMETKL