Scaffold Ga0334985_0000016

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0000016
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117127
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F002332	Metagenome / Metatranscriptome	569	Y
F006840	Metagenome / Metatranscriptome	363	Y
F091487	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0000016_16363_16659	F006840	N/A	MSKGFKLLRGRTILLSVPERKKSGLELSAKDEEAMMQEAAKLWSRLTVYATGDKVEEVSEGDQVYVRTSALNMEQVERIEIDGSIKLVLNEGDVIIVW
Ga0334985_0000016_27259_27618	F002332	N/A	MALVNQVQKRVVMSRNDVIKFQILTHCYINRITMSESDLECLTLLSLLGPIELSHFCYEASDEHKIFKSEQTVRNCINKCEKNNLVSKDPANKKVVFIDPALKVQTEGDILLDFKFLGK
Ga0334985_0000016_5411_5884	F000716	N/A	MEKLKQEIKNYQLNAGKTYMQYETDRYSQYQNYLYKRALYGLNALSEQELATMCSKKKQRIVNVYKRAQVVINKLKQEFTIKYTNFMFKTLFPNSPLTDSLLACSELDEKFKNTLTFKDLNIGKDDIIAIFIAEGILPKNFLSLDKDPNQLPRLKNQ
Ga0334985_0000016_93790_93960	F091487	N/A	MHPITFRKAMIEAYMAGAEAMASGDIDEPNKKDARDWFDNEYGQLESEDCDCCEEE