Scaffold Ga0334991_0047420

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0047420
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2266
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N
F049590	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0047420_1_597	F049590	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRYDKKTGKRVGKSRQLRVVHLIAQAKNAKEGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHKGSSAYAYNAKAGFN
Ga0334991_0047420_1714_1857	F017997	N/A	VNFIEQIVAALLKWLTGFVQKPPTVEDAKRDPDLKKKLLDRIADSNR
Ga0334991_0047420_2030_2200	F031459	N/A	MQTDTNNSSGVGISLATAAAAGAVSFLPPLTQWFQLGAAVLAFVAASIGLYKTFKK
Ga0334991_0047420_594_995	F007260	N/A	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSNADRLLQESGSFLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK