NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0043218

Scaffold Ga0334991_0043218


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0043218 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2409
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026507Metagenome197N
F040620Metagenome161N
F078409Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0043218_1370_1660F078409AGGVAFVRNGKIVDEIERVLENIMKEPISSDAVWASIEGKIHGHYLAAQNLPASCPQCAKILEPVDFGVDPDSNERMWVTHCCGNWEKFYEKLGPSDLI
Ga0334991_0043218_1714_2112F026507AGGTGGMRCNLGSIMICEHGADAPKFCAICRHQGIMGKAEGITLAKDSQLNWHNEAVICIRQMARTGKPFTAEDVVNEIGAPGGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQVRLFDGN
Ga0334991_0043218_255_515F040620N/AMSKWVQVKHDELLEYVAMVEYLRKDHTALQEQIKDAKELASIIEATYKARLDKLTDYILDIHPANYKYERGLLDAYNIVSGHEQSA

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