Scaffold Ga0334991_0043218

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0043218
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2409
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026507	Metagenome	197	N
F040620	Metagenome	161	N
F078409	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0043218_1370_1660	F078409	AGG	VAFVRNGKIVDEIERVLENIMKEPISSDAVWASIEGKIHGHYLAAQNLPASCPQCAKILEPVDFGVDPDSNERMWVTHCCGNWEKFYEKLGPSDLI
Ga0334991_0043218_1714_2112	F026507	AGGTGG	MRCNLGSIMICEHGADAPKFCAICRHQGIMGKAEGITLAKDSQLNWHNEAVICIRQMARTGKPFTAEDVVNEIGAPGGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQVRLFDGN
Ga0334991_0043218_255_515	F040620	N/A	MSKWVQVKHDELLEYVAMVEYLRKDHTALQEQIKDAKELASIIEATYKARLDKLTDYILDIHPANYKYERGLLDAYNIVSGHEQSA