NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0041090

Scaffold Ga0334991_0041090


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0041090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2490
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019647Metagenome / Metatranscriptome228N
F090393Metagenome108N
F098943Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0041090_1030_1278F090393N/AMALDRKTPFNVSFYDHEEQKIQNWAFKGSSRLALLVHTITSQKDKIEVNNINKEEIIKSALDYLIHDLKKFLETPYTTEDNV
Ga0334991_0041090_2185_2490F098943GAGMMEIKAFCDEVNTFISVAPSAEMLDECDQYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQL
Ga0334991_0041090_569_967F019647AGGAMKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEAPVQSTDAAEKPDFEQKVFEMCALYSKNYVDIYNAMVAAGIPHENATAATSTIFIQVFQKMR

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