Scaffold Ga0334991_0039137

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0039137
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2569
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0039137_1519_1731	F000311	GGAG	MYFELTAPSQVAFARAIWDAEIIGLDPEEMDSLTFNIGTGSIEKVTRLREKHNLKLIHESDSEQTGYRRN
Ga0334991_0039137_2088_2483	F036238	AGGCGG	MGDRANFAFKQSDTNTIVLYGHWAGYEMLANLANAVDKARSRWTDESYATRICVSQLVGSEWNSETGWGLQINSISDNEHKIPVINWGTQTFSLHEEAPHSFDSEIRGVKDEPIFTMSLDNFVKKYSLALV