Scaffold Ga0334991

Basic Information
Taxon OID	3300034013 Open in IMG/M
Scaffold ID	Ga0334991_0015135 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034013 Open in IMG/M

Scaffold ID

Ga0334991_0015135 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4704
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4704

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F015597	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0015135_1397_1663	F003714	N/A	MPNAQHPYTETLTFAGRVLPLKRPMAEFAARRLEAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNLKKRGPYSSRA
Ga0334991_0015135_1686_1943	F005588	N/A	MITTIRPNKMPAFWWLVPWAYARTLHMSANALKAYADRLDDLHDLQRTIIEQQAADIRLLRQRVRDQDDAIIKGTAITPDAYPHE
Ga0334991_0015135_1963_2220	F000957	N/A	MRNLLIEIYEVNERIMTGDICSAKTAIASTNMKKMLSHYHEALHEDGAVKVSLQAYIAAGGWVGIQYSYEMDGFEVAGSQVPRRV
Ga0334991_0015135_422_799	F001923	N/A	MSPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVVRRVLAAAITAALVGYAIADHIESPGLRMAVVGASGYAAPECLDYLMRYIKNKGDAEVGPAAKKPHGKNKAPAKGKRKR
Ga0334991_0015135_4455_4691	F015597	N/A	MSQPDFDPFDPISAAMGAMHGQNLLAAKDARIKQLEERLEGMREAGDAIWYCVRHAKRVDPAELIEAIEDWQEARNHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334991_0015135

Overview

Ecosystem & Geography

Associated Families

Sequences