Scaffold Ga0334991_0014708

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0014708
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4796
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F019325	Metagenome / Metatranscriptome	230	Y
F024314	Metagenome / Metatranscriptome	206	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0014708_1885_2061	F048982	N/A	MSVELRDVLAVTRQIRGNDRDSGAHYLLGYLWANTSEHEKQRIAELFTNDLLEQEKNK
Ga0334991_0014708_2503_2658	F019325	AGGTGG	MTTLTETLFSTIVHDFHNGGVKSSYGLDAYTRKEILAYLLRSKGCQCINCL
Ga0334991_0014708_4053_4196	F000447	GAGG	MGYVEIFRFDNEGAGWVDLESATPDELFNLEVGLLNEGALFTTKEND
Ga0334991_0014708_4196_4405	F000808	AGGAG	MEYNYSITFSYDGELFSTMRTADLMEAVDVWNKCVDYGHAEQYATYNLSDPTGKMYTKTFYRNGEVTVK
Ga0334991_0014708_913_1083	F024314	AGCAGG	MSNTTEELTPDQAQAILLFQIEQKLRFIIANQVEEKFHGMYHNESHDIAQFIRNMS