Scaffold Ga0334991

Basic Information
Taxon OID	3300034013 Open in IMG/M
Scaffold ID	Ga0334991_0014034 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034013 Open in IMG/M

Scaffold ID

Ga0334991_0014034 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4935
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4935

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F004696	Metagenome	427	Y
F005299	Metagenome / Metatranscriptome	405	Y
F025025	Metagenome	203	Y
F032282	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0014034_1874_2281	F005299	N/A	MKNLNMNNMNTPNHLIDPIDSPNEIWESKVGYDSANKRMIAKVYKHLYNVMNLLTKPSWTAIINEMLIEDGKLGKVSTNGYYSTIRKNLKDIGVIQYNGRKGLSKGPNWDRFYSDEDWNWFRTNTNSGGYGTIIK
Ga0334991_0014034_220_429	F032282	N/A	MNSIALHSIDIEKYSSIESEREKVMADSKFQKWCSDMRIGSRVEVKNYRAIELQMQYEQNYPKWISRMF
Ga0334991_0014034_2300_2701	F025025	N/A	MSKSKVKEIKLGKRGYKAIVKNKKFNFGDGTHIYEVIELSGPKMDKARIFVDEESVRKYVGEIDAEAKADKLETSLIKNVLSKKEKKELLAANVMEGALVSDKMVLDTAYSTYYNGGSINVETTTANGEDTDK
Ga0334991_0014034_3502_3873	F003691	N/A	MNNRMTNEFNLYTEIAYNTSRNEKPQYRNFSASKFNIPTKPNSIVEFKDFMGRTHKVVCKNNTEVKKQMKFFAELKKESLTINQIISSYPMKFGMIEKRFLSEVKKDLKSIGLNKKMIDIVLG
Ga0334991_0014034_487_717	F004696	N/A	MEYAINKLKQDEVVLMKKIKGLQDGKPKWNASKQLDEIRSAIKLLERYNDITAEDTEREDEYLQELFEQSPPKAQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334991_0014034

Overview

Ecosystem & Geography

Associated Families

Sequences