NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0013305

Scaffold Ga0334991_0013305


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0013305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5107
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006935Metagenome361Y
F012774Metagenome / Metatranscriptome277Y
F017132Metagenome242Y
F041601Metagenome / Metatranscriptome159Y
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0013305_1006_1338F047676N/AMELILALIVLIIVWCIAFVAGNKHMINKIKKDGGYFDTEITGAVYPYKHISVFEQDDTMGTMGSKPKTQTDYQNEHKIPPCVGHELESQKEIEKGDINFMHNWIREKSGK
Ga0334991_0013305_1727_1921F006935N/AMKQEYAKQIIQWAEDAKETLTIRKEIIMDDDTTDEQLGMLIRMMYRAKVQTQNETIEKTKQNIK
Ga0334991_0013305_3052_3261F017132N/AMIRKIETAKVGEDLYEIVKKLPIQKFTTELTGERADTLKTYFGVEKILKFNQTMEYLFVNKIDEIETID
Ga0334991_0013305_3615_3797F041601N/AMKQSILKLVNQIKEDLKAIDRDGVSHPLIDDVYERLELIEDEIYEDDAQADALSFEDDDY
Ga0334991_0013305_3736_4104F012774GGAMKDIPIILHIDLENQSVNGWLEENRYIIFSELVRYSKKLLSEDLDDVQAIMVSNHYDNLVFILKKENLKLTLDKAMEYFMDVEEYEKCAEIRDLYILIENLKNETKYIKTSKSNQRGLKSNR
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