Scaffold Ga0334991_0013280

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0013280
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5112
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013412	Metagenome / Metatranscriptome	271	N
F029732	Metagenome / Metatranscriptome	187	Y
F039136	Metagenome	164	N
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0013280_1110_1292	F029732	AGG	MKYLSKTKPTVAVEFIAEAQLRIGETKRLCVIYQRGEIFFVRPKAEFFDKFVLDEPQIQT
Ga0334991_0013280_1289_1564	F059002	N/A	MNILNEIKNGISRLLGVHKTLETKEAPKTLKPKRSPKRGRGRPKGLKIPREIVDAVLQADKSVSNKQLAAKYRVSCFWIWSVRSKKLRLKR
Ga0334991_0013280_1731_1973	F058715	GGAGG	VSLLEKLGLSKQSMERMLGAVAPLKKTKIKRYRRYETVPADIRKAILEEHSSYTCRELAKKYGVSASTIWDIRESKSKIE
Ga0334991_0013280_2932_3186	F039136	N/A	MTIEIKYTASVYTPAGWRGVTITAKATKTSEKMALVVEVLEINGESPKSSMSRTGANRQRFNGRGISCREVGAKKRLSACEIVN
Ga0334991_0013280_4072_4401	F013412	GAG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVQFRSFDPDDMDAVLLLTEGTHVLFDGDCDAVADKSSTGWWYANPRITGRIHEILPSGHES