Scaffold Ga0334991_0012812

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0012812
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5235
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F070119	Metagenome	123	N
F072347	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0012812_3293_3727	F007525	AGTAGG	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEIYETFYEAIDAGIDHITDDQWWD
Ga0334991_0012812_3869_4081	F070119	GGAGG	MNLNSYSAFDFVIPNCLEPGDIIQWQEEIYTVKSFDLLSDGFIIYAIDEMEEDVELLIPDNTVLSLMEEQ
Ga0334991_0012812_4602_4853	F072347	AGGA	MDNRTKAEILVQFTQDYFNSDEYDEFFDYNDLGIPMSIAITQDMVILTDSGEQLLEETWIELCNLFEADPNGEYESIDDLTTQ