Scaffold Ga0334991

Basic Information
Taxon OID	3300034013 Open in IMG/M
Scaffold ID	Ga0334991_0011261 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034013 Open in IMG/M

Scaffold ID

Ga0334991_0011261 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5683
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

5683

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001725	Metagenome / Metatranscriptome	645	Y
F083898	Metagenome	112	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0011261_4764_5147	F001725	GAG	MAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELTVEGIAKTSSIPVLGAVLTFTLNTLSAYPAGSASASFVGTITKIDDKGQNKGFTTVSITAIDYEGITPA
Ga0334991_0011261_638_2443	F083898	N/A	MTIQPGNGFNFVASSQGTSLDINQPWVPPIGDALVFAPEFVLGNSSLPEQLVYGTGSGGDPAPFECQILTINGQRYLQIAVGAIDYTAGPMPIIKSGADTRIMQAFANKVQICPSGTRNYGDLYPTFPFDEPSYSLTWWMEDGGGYELSDTNDPLTLWAFKWDVDVGVAPFSSSSVVNTGLPTLALIAASNSTDTNKVAVDPGPSIFVQTMNVQKMTGYDHASTGLPLDWGHCHTSWLNPRKLGYNYKAIATITPSANTFSMVGGEERPGIPLVQNQVQHISLIGKASGGVAYIGCGGSTSVIPFPVTTFWDAIAPIYSNELTLAECLNSIPPITFTVDGEPVVIGFAGNVEVSRTTEGSYYVTFCNELAGLNAPLLTFNTAGVTAFTYDFDITQYYTGNIDLTTPMQTGMVQLRNVPGEDEADDPYNVNFAASWDQIVNKAECVACTGFTGDVSTDGMFNMTGATTIPVDYDGGECINEPTASHPYQVLFVGTAGGSDTYSIVTGATNNVTPGNIASTITVTTGAYDVYIRHPYLSPNFPDATNFAWAISATIPADTDTDGYILIATVNGSTVTQIVTGSLWADRLKLGTQTAQYYFAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334991_0011261

Overview

Ecosystem & Geography

Associated Families

Sequences