NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0010170

Scaffold Ga0334991_0010170


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0010170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6084
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077311Metagenome117Y
F105157Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0010170_4909_5145F105157N/AMRKIHLSKFPERPLVLKASLMFVEDNKICDGCDERVKCASIRTLGDGVSILCQDCIEGILESLDPSVVRDIKIDKILK
Ga0334991_0010170_812_1159F077311AGTAGMRFIVNSRGEYYHIIEELVCPFNEKKDYIILKDGEIIYWQNANDYYHDMKLDIETTKEHISKIELTKYRSETRKQKTLGFMRETLSKMIAYKREIKIEEVLNKIPKEDEYKYWVC
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