NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0005115

Scaffold Ga0334991_0005115


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0005115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9487
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.04%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019824Metagenome / Metatranscriptome227Y
F091907Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0005115_8180_8512F019824N/AMEKYITDNFTGSIDDLLNHCTNLDIDKVEAQVKVEEKEACIQIIMKEANCDESEANDIYNEILLTETKTTIDKMVADGILYVSGHNEDGEPLFNLTELGKSVRNELNDNK
Ga0334991_0005115_9227_9487F091907N/AKTGRKATVVNEITDRNFTIVDLVNINSTVKAPTIRMHVKRSVSAGRYKISGSQKTGKRGKPSLVYTYDATPAVTSTTVESTQTSAN
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