Scaffold Ga0334991

Basic Information
Taxon OID	3300034013 Open in IMG/M
Scaffold ID	Ga0334991_0004994 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034013 Open in IMG/M

Scaffold ID

Ga0334991_0004994 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9627
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9627

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F019449	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0004994_3827_4084	F005588	N/A	MITTIRPNKMPAFWWLVPWAYARTLHMSANALKAYADRLDDLLDLQRTIIEDQAADIRLLRQRVRDQDDAIIKGTAITPDAYPHE
Ga0334991_0004994_4107_4373	F003714	N/A	MPNAQHPYTETLTFAGRALHLKRPMAEYAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNLKKRGPYSSRA
Ga0334991_0004994_5112_5438	F003583	GGA	MAKAKPLPKESGSANLLLAVTLLTAFAGVAALSSAYISGYVLDTLQSRDALVMIVTDSGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGLAVFLRSRRQKA
Ga0334991_0004994_5395_5775	F001923	N/A	MSPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVIRRVLAAAITAALVGYAITDHIESPGLRMGVVGAAGYAAPECLDFLMRWIKERGEKEVSAVSGKKPHGKSKAPAKGKRKR
Ga0334991_0004994_5772_5939	F019449	N/A	MTTETFTTIVVPGVASVAYASAGIACFFAHRPALAVMWLCYAVANICLLSTVLRK
Ga0334991_0004994_922_1161	F002038	AGGA	MPDIPAGIERIAKTVSGQYALLLLLDGYPYVEMTARKQADYLSDLGLWKRKTHPSLARSQVRFFTLAPSGEIKELTFNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334991_0004994

Overview

Ecosystem & Geography

Associated Families

Sequences