Scaffold Ga0334991_0003736

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0003736
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11609
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039142	Metagenome / Metatranscriptome	164	Y
F092056	Metagenome / Metatranscriptome	107	Y
F093292	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0003736_5243_5476	F093292	AGGA	MPRKKIAAANTESPEVAQDVVDTMPTYYEYTTPDGTHVLLDRYEWTRGLGITDKAVKKAQAARHREVAKGFATVEEA
Ga0334991_0003736_5859_6131	F039142	AGG	MMMKEGTDMKTFTTPQLVEQLYANLRVLAPQDAVNAYIAGYLSHCLADIATKGVDELTAIVDFTNQQVEVLEYNRRAYDRREKFENGEYA
Ga0334991_0003736_6162_6389	F092056	AGG	MNFSVNDIEQVVLDGIAKAPDAFDYIYECISGTHGVKLSRYVNELYADVAIDHRLHPDDDFEEIINFMLDDLIGA