Scaffold Ga0334991_0002653

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0002653
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14356
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F023848	Metagenome	208	Y
F028717	Metagenome / Metatranscriptome	190	Y
F040626	Metagenome	161	Y
F042895	Metagenome	157	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0002653_10585_12021	F023848	AGCAG	MRNVDIPLFGEQKTVLADWLTTDKHCIDIVPVGSGKTFLAAIALPIFASDPRYHKGKDVIYSAPTGAMIKSLIWEPLKKSCIEYFGLVDGKDINNSELTIRFPNGTFIRCKSAEQRENLRGLNVGVWVADEAALYTQDTLQEITNRLRPKVGQPDTAGRLIVISTPNGTGPLHDLFQLAKSSPDKYIVRHYNYLEMRSGNKNFIDEQRRIISPLKFGQDYMCQWESVADMFYYAWDKNKYCSEVKDFGGDLYHFADFNKRVMCATIAQVKRPGELNGSIEILKSYAIPDCSTEGIASAIREDFPKRRINSIIDMSGTQVNRDTTSPFGVTDKIILEKYGFNIVNRRKSNPLITDTDNTSNAFIARGGLVVKPDDKFLLEALQTYHFEDASRKRLVKYTEQKYAHIDGLGDCIRYGIHHLFPITHQSVGIPEYVGMDPRLANRARPGLDHMPDSPLYPGGPSWEEIMNGDQVEDYQVWS
Ga0334991_0002653_13885_14253	F042895	AGGAG	LSEFKGLIDKPFYVGHIKNLDKMITELSPFMNEYEIDQCISFMFTLEDTKYDINPSPEDCKTQLQIMLGRDRFLELTQAWGKKNQKFLSVFGALKYKDKRDGKFYDGLDETDNVEDYEKVYI
Ga0334991_0002653_188_865	F101171	AGGA	MENIPAVANNKSLVNNAEFVKLTIYNEYANTANNNVYTFSSSYQSETIDGQTYTPLGGLLAVGIQQRDIRVTSADTSISLSGVSGNNMAIVLGNKIRGSKIELTRGFYNNNYILSNVAQRFTGIVTSYNISEERQDNDDNFTITLNASSFKSVLENRIAGRKTNSESWKEYNPTDTSMDRVPSIADKQFDFGQAPKQGATTQSQAATDAGQVAQDTNTNVTDASP
Ga0334991_0002653_4185_4415	F040626	N/A	MASILWIDTLGKRYGMLPSEVIGRANTFDLYIMDAALTFENYHHKKSMNNGREPIPDYTQDELMDMLKKNKEMNNG
Ga0334991_0002653_4448_4744	F058146	AGGA	MKLSSLTAKPQLIDIHLDDEETIKEFGEAIEFWTWDRQPMETFMKLANADHGNTASIVEIVRTLILDEKGKQILAGDQMLPTHVLMKVIGKVTELLGK
Ga0334991_0002653_4778_4966	F003807	AGGA	MNEEHSVWLHSKEDKLRSLIADEAKAMPMLDTMQATIKQLKAKQAFRLALLNQLLEDEIDNE
Ga0334991_0002653_5551_6003	F058142	AGGAG	MAEVTYSVLNEPTVTETQISAVLKRDIPKAWNIPIYSDFPSDSEVVRYGVYVSDVHTVSRNPHQLGIQYCGAIYHAVDEFNVTYISYQDDPYNTAINAIIANLVTAIKTDGQQLMDGYFERDFDQVRTFGPTQAEKHTWTFSLTRLEFNT
Ga0334991_0002653_6003_6530	F002260	AGGA	MSVPYQRISNATVADIQFYDPAAERRAAALQVDWAPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDLQNYEFAQKRCDNEWTKALQLMNFYDLYMDSPQGPTTKLEENWTADVDYFNGDRRYF
Ga0334991_0002653_7618_8397	F028717	AGGA	MDNQNFVGNDVAPVTAQDSMSEAGEQNVNPGAIRKSTTQSLLTALSNASGTQFQSVEDALSYMARVGAQNNNAGNVQPSGQPKAQQSSNGRVTTNDLHEQFSKLQNDLAVKEQRLREKELDSDIQRAMGDKFDSDLLDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGMPLTISGLVNEVAVGNPKLLRQSNTNSGSGLRPGQGSFTGALEESIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSSSSRKIL