Scaffold Ga0334991_0002005

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0002005
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17159
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (60.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F045097	Metagenome / Metatranscriptome	153	Y
F060913	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0002005_1558_1746	F045097	AGG	MKTDDIKQKAIEAIPYVAVFGVAALAAYGLTKLVEAVADMDYPLDFGNDEFLTEHMKNSDED
Ga0334991_0002005_6705_7082	F060913	AGG	MKYKMRKGNVKMIKVYQIQLTDAEIAAVNNGETSDRIKAYFDRSFDGSFKAENFQYYTHVANVAGDNMEDMEKAFELMNLWERPELVDKLGPCSSMSVGDILDVDGQLYRCASFGFAQLENYQRD
Ga0334991_0002005_826_1005	F023351	AGGA	MVKESKGGVFAPTDYPVIKRALHSYLIECMRTEGVSERDPHPDVAVISNLIHRLGRIQS