NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0001992

Scaffold Ga0334991_0001992


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0001992 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17223
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009264Metagenome / Metatranscriptome320N
F034825Metagenome173Y
F038093Metagenome / Metatranscriptome166N
F058129Metagenome135N
F088880Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0001992_12577_12783F088880AGCAGGMRIHTEDTAFIAMFVLVIIGAIACGIYIVSNNNTIKVIDGCQYIRQYNGHGWNLTHKGNCTNTIHYKK
Ga0334991_0001992_13056_13244F058129N/AMTVYLVYNNSDRDGGVDAIFDTERKALDFMIKECYSAHYFKSMDSTSLDNLAHKYIVEMKVH
Ga0334991_0001992_16877_17221F034825N/AMTTLEQLLADHTILIQKIIAEAKNEALNDAPKTKITITNSSIPPVQTKLDLFSHISSNFDNLIKEKKDKEMLTPYANPYNWPRNTNCWAKSLDLTGYAACIVPLGGVGGGTLITK
Ga0334991_0001992_2853_3110F038093N/AMDKIKINFLILRYGAILHTIFVFPILYMADIYANTPMFWAFLLNHIMFGYFVLVKGCALGIEQTINIIAHQDATKAIEEDTNKNN
Ga0334991_0001992_5247_5654F009264AGAAGMRAYLEFSLMDQEVDHLAKIGFGAKIIDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFQNYPYKDDDCEMYPIIWVKLDYDDSNKKMDYVCFQNLKYQAVVYFAPYDWNTTRNSKKIKF
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