Scaffold Ga0334991_0001152

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0001152
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23579
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005114	Metagenome / Metatranscriptome	411	Y
F048169	Metagenome	148	N
F056545	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0001152_7059_7337	F056545	N/A	VILLAAPHCALSQCTDSSTVSANNYYLLKGAEARENLALCREQLKIDAEVIAQQDKIQAKLLDELQKRDQKYHRLRRTTYAIAAVFLVTLIL
Ga0334991_0001152_7267_7569	F048169	N/A	MSKGNLTILLLVLLVFGGMAYVEFAVPKRERVVHGPAIRIVEKDLDTLYQIRLKYKALHDTQIVINQKYDTLYIALAGDTSCSTTLRLIAMHRQLDSLGK
Ga0334991_0001152_8560_8901	F005114	N/A	MKAIQINTSVNLTSGLSIPSGSIVVIAEGYASVKDQKDGIIPAQIATFVFASEQALAEGKAPIQGIQDFNTTFADLQLSVTSYESDSAETLLINAVYSALNAIYPAQVEVVTI