Scaffold Ga0334991_0000408

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0000408
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42483
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (10.39%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F031032	Metagenome / Metatranscriptome	183	Y
F033727	Metagenome	176	Y
F039051	Metagenome / Metatranscriptome	164	Y
F056429	Metagenome	137	N
F058003	Metagenome / Metatranscriptome	135	Y
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0000408_11748_12041	F025465	N/A	MDELTIIKGKVLLDTTYLKIKISLEEIKQKHEHRTDLINSMERSLADLQEVKISYDGMEKELRAAVQSSFRLERLLQEEKFKVEALKKELEIKGIDL
Ga0334991_0000408_14483_14674	F056429	N/A	MKMNEDLKVMGYYKNTTREQVVQIKDFKKDKLWYETIRQYETNPITEFCCSVERFKRLYISKQ
Ga0334991_0000408_16112_16315	F033727	N/A	MIEEAVVLKNANGITRQMVMNYLQKHELSLNAFSKLVGIRQPNLFQFMSGKRLSSKSIEKLGEFFSK
Ga0334991_0000408_16411_16767	F088280	N/A	MRSLFMNCPECDGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGVAIDKDEVEDRMGIIEDMIQGMQTRMRLHSDMIMTCKKGLLHELSEKYVYKLDTCSRALGRLLNYKRKLHKLAE
Ga0334991_0000408_17973_18134	F031032	N/A	MNPSKHKQDWNALRLIMKVSEINYCVFIDYQLYSLEIHAVEKDEFEIYKYNPN
Ga0334991_0000408_37898_38113	F039051	N/A	MIDVSKVIEIIKKQGATGVLALWLWYTHSDVQDLKHRLYECYGKNNKVATRQINDTTHFAVVPKDELIEIE
Ga0334991_0000408_38630_38851	F058003	N/A	MAKKNLNVNVDTENIDVNVERKDGDLKVNYDSKKLDVQVNKTADNVEVKVDAQGGLLKFVGNIIKKVLLRRLK