NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0000244

Scaffold Ga0334991_0000244


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0000244 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57531
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (4.41%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F068846Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0000244_11755_12129F002045GGAVYCKTRKKVDKFIKVNRIKNKYIIDIKKIMEEEEVNFDDDKMYLKVIIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRKSPEIIDDVFSNLSKFSNSQIIRDY
Ga0334991_0000244_27625_28329F068846N/AMKKFSKLILESKDESRTMSPLTNPVDWDEIFKPLIDHIESNLQSKVQGPGSAVFTNQTKALLDEFIDQVEEDYKDYYQYEIHDGSQEGFLSAFNINVDYRDIMDCIQPLLDRTDDVEDSGNFELGAFVIDIAEKKPTAPSSPIKYNTNEEIAEDLADVHGKLKMLDADFTIRVTKSKTAQYSSTRMRETGTISLTKNSTDVDTLFLNGLHDDEKITNVIIYVYNKETVQGADLD
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