Scaffold Ga0334991

Basic Information
Taxon OID	3300034013 Open in IMG/M
Scaffold ID	Ga0334991_0000191 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034013 Open in IMG/M

Scaffold ID

Ga0334991_0000191 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65428
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	78 (84.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

65428

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

78 (84.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009319	Metagenome	319	Y
F020864	Metagenome / Metatranscriptome	221	Y
F023061	Metagenome	211	Y
F043287	Metagenome	156	Y
F045610	Metagenome	152	Y
F093219	Metagenome / Metatranscriptome	106	Y
F102438	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0000191_34547_34759	F043287	GGA	MIIEQQAKELSSDVTEVATKVEIYCPNCSRDVDEAELFNKVCNDCGADLSSPEQHVAVAVTSVPVIGITW
Ga0334991_0000191_44085_44270	F020864	AGGAG	MTFRKAADGVTKQGKTKGKNLGDSGPNVGIQTGKGSKGASTVTSASMKAVGRNMARANNQ
Ga0334991_0000191_46963_47148	F045610	AGG	MKHDDIKQDMPMMKKVAKQEVKAHEKSMHKMAKGGVTRADGCITKGHTKGKMISMKSGGM
Ga0334991_0000191_4749_5012	F093219	N/A	MVQMNNERSLAKEITEGFEALKSMRNNEPVAWTACLDCGKRVTGDSIHTCSPQLKTLTDEEIDAVWFSYKGDIKDFARAILRKAQEK
Ga0334991_0000191_53609_53803	F023061	AGG	MMDAFEALVDILDKEVIVKRDWVASGQAADYPEYRRICGEIHGLLIARQETIDLKRKMEHSDNE
Ga0334991_0000191_58851_58982	F102438	AGGA	MFDFTKQTKQFEELAKRIQEVNEFWINSVLTSTKEFFNTAKTK
Ga0334991_0000191_6993_7157	F009319	GGAG	MIETLVKPQPLDNDVAVVKILQLMGQLTPNDIAYVLRVSAQVYMAVREDKNNGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334991_0000191

Overview

Ecosystem & Geography

Associated Families

Sequences