Scaffold Ga0334991_0000023

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0000023
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 175660
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (9.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002779	Metagenome / Metatranscriptome	530	Y
F006142	Metagenome / Metatranscriptome	380	Y
F007365	Metagenome / Metatranscriptome	352	Y
F045788	Metagenome / Metatranscriptome	152	Y
F046381	Metagenome	151	Y
F059003	Metagenome / Metatranscriptome	134	Y
F097351	Metagenome	104	Y
F101158	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0000023_100968_101507	F059003	N/A	MIGLEHRDASFILLSSPRIEDMISILYAKEYQVLPIKGYYKGQYEDSVMAYGRVDNDTLRKDVIFLLNHFHEDCAIIKYTGETNAKKIFKDGSEIPMGIVMYNTDSDNMSYLHNGTSFSFVESKRYWKPTKKEDFRVGMLVEYFNKDKWYERKVENPNDEYEKLYKLLIKYDKVRVASI
Ga0334991_0000023_129415_130698	F002779	N/A	MKNLKLELFNFKKNLTLEQEEVSGIVEGHMNACNELSEKQIIISLNERLKPYTYDKSVKSLLENLNDDVKNYELLYELKNLYNVINTKNQGELYRQPLNVLLQTINLDTDQDRMSKILNELAIYDWVPEVKLFVHNLTKSPEKRNNLLSGGKGESTFTIVEQVEDGHVALVNDSWFLLSENTIEKTLLENHVKNEEELKSLRMLETAMKYASVTEDRVNFRISEYLTIGLSVGKKSSLFINDDEMNEETTLESVFDSPIIPIVNKNFYPVLLEVSKNLDKFVELDVVKRVNNLINPYLEIFAFNYKNSTYLYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFYENRLDKELIVKRKLEDKEREITLKLEDVQFNIEKVKGSIQMIGESAVLVTALKNLEKRRDVLNTELNATKELQYNERVRA
Ga0334991_0000023_1946_2392	F046381	N/A	MEYGVIYIKVCPKDGTPGDWIKYCHILSATPKSFQKNAEDIANNINTKYSDSIVIPMDIDVHPGCTTTPESVEEIATDMYNQFCELAERQGIPNSIRCVYSVGELEKIDWDFRDQHGKYSTHYLPSYPVMIKVGRFLDESDEPGIYRI
Ga0334991_0000023_19780_20043	F007365	GAG	MKEMAIRDYISKIDFKNDDWKLSQIKEDMRRFLGEEPGIDVVYKKDVMVNEFTGESKEFKDIDRVFIIFTDTDDRFKKIEFILGEKI
Ga0334991_0000023_21159_21470	F101158	N/A	MKYLKKYNENVEQQDTTFAITKIKEEYKSDSVKKMLEKEIKQWIPDEEDPDFYSTSGNGEAEDVIINQMIGWFNKKYYVLSDENFEKVKQLILKEYDFLNFNY
Ga0334991_0000023_53754_53972	F045788	N/A	MKNMIKSLLVERNVESKNFSDEILYKVGMDNVRDNIEFYHDKTFTCESVIKELFIRGIINYIEKNRFPYLEK
Ga0334991_0000023_62818_63075	F097351	N/A	MIIGKKSNLEQGYVFAPYIPLTTTSVISGYTSKNVSRKRKINKIFGLGLDVKDEFSPSKSIMSRYSKKIINNNFYGTIEIKNPTY
Ga0334991_0000023_63702_64385	F006142	N/A	MKRKNKLILEFTEFNMQRMNPDSAAQTVGGVDDPSLSTNAFDKHSDAIRQAMGRINDILYNLSGTSAYKNLRSRLALEHQDIQSIKILRIVKNEIYYDAYITFKIDDYEYWGVIENVMNANPELTSEVFKDYDLYQSKEWVIKIKGLVVKTIKTWLKPEPGIYRLLNDEIICYSTETGKQLKMDKGIEIELIRSHSDKIIIKHESDYYNLVGDNYVYFNWWFEKIED