Scaffold Ga0334986_0112386

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0112386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1616
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030408	Metagenome	185	Y
F035274	Metagenome	172	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0112386_1176_1448	F035274	N/A	MITFDQTELNNAIELFQIDDYYISCKSTVCHLHWVARTEQAREYIDAFLECLDVLIDGQWVDTYGSHEQGNSVSLPDQDYIACRYILATI
Ga0334986_0112386_34_240	F059883	N/A	MTEDNKRYHLIINVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPVFVDSLATKIANTF
Ga0334986_0112386_766_990	F030408	N/A	MGLHVALIADCTGRYAHVWGSAPTWSQFHDQLEDAGCEVIEDQSIEWEGCTRDEIAEDCMSVHQLLTDSDFVAH