Scaffold Ga0334986_0102842

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0102842
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1710
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029678	Metagenome	187	Y
F033321	Metagenome	177	Y
F066470	Metagenome	126	Y
F075715	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0102842_3_245	F066470	GGAGG	MTEIARRIESAKRSAVIYRNYRRARERALTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTGQSMDLDASTSPTGGR
Ga0334986_0102842_559_711	F029678	AGGA	MSRVTGFTIFNKVTGQKLATLPLSIPIGATVDAYEREGHQVSWGWEESND
Ga0334986_0102842_708_878	F075715	AGGAG	MNKEYLAAKAELCSNLAQEQMVNGEGEEAVKNLKRMIRALEEINLINYLEERKTIR
Ga0334986_0102842_871_1014	F033321	GAGG	MNRELEVLREEYKRAVDSPLFDDPKDYCVLLDLIQDRISLLEGENNE