Scaffold Ga0334986_0078833

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0078833
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2016
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0078833_1837_2016	F002269	N/A	QLEAAAKSYARAALASVAALYMSGITDPKVLANAFIAGLVGPLLKAVQPSEKQYGLGSK
Ga0334986_0078833_330_515	F066777	GGA	MSELTFIKDGLATTIHDNGEITVVAAKQCDECFKWHTALGGFDVRDVSGEVVLWLCAQCR
Ga0334986_0078833_512_1120	F007029	AGGAG	MGFLDNYEDVNARIKRFRLEFPSGRLIAYIEDIDIIKGTILVKAEAYREYEDMVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSEHARPTVQDMQKVETLPADSDPWSTKASIEDMATMANGILEIGKSLGGELVAEAPRCAHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVFGSDGKWKPQV