Scaffold Ga0334986_0055174

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0055174
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2506
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F056536	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0055174_1687_1935	F056536	N/A	MLCYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIERYSQTLGGGIPCGTKELLAAMSDYYQYISTMHLDTMAGTIF
Ga0334986_0055174_2029_2217	F015587	N/A	MTVFNIRKNIAAALFNTAAAIDNAKLPTKEDIGTKVNEYRTRAAALIMPNDMAFVITPKQGN
Ga0334986_0055174_2221_2424	F021097	AGG	MYRNYFSDACVALILGTGLGLLASAGVQQVLNKHYQTTCHDRPGHNLIYVQGFLGDTYFCINSKYMN