NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0053990

Scaffold Ga0334986_0053990


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0053990 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2540
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035193Metagenome172N
F042160Metagenome158Y
F070853Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0053990_1680_2294F070853N/AMGGMIWTGRLNGNGERGAYPIYKGMRVNCETMQPTKPITVIGRKVDRKVGKDLLAGYADFYATTEVMTKAMDYEVFVKTLLEVMNDHIPNNDFYLDHKVYTSVADKLIDTAPLDSAMLYIFAWDIGNMRWNLRRFSDSQMSRYSAHEDTPHTMFLNLKRRLNKEIYKANETVFKKVEYVNGEMYPPSEWGYTVMVDGQEVKQYD
Ga0334986_0053990_173_544F035193N/AMDGYPMPHLIGELSPVVHPKNWDLIRVPVRKVDDQYIVYVADGFHRIYTDDTLPDVLKSKFAMINANGEKFLFDSKILRLTLYTNTHAPELDEVGWRASETYYCLVVDRPTLESLKGGIQNDA
Ga0334986_0053990_517_1491F042160AGGAGMTYTFSRYFLDGFGTEEQLNELLHSDVLPLVRELQFKYGLKVMGKVMNVGYPQEDKDSYMMCHPNGLAVCKVWTTSLGGANNDQIEYCFRTPFYAKSRGSDQSDRETIRSTKLSSLMAVLKRQAAVRSKKDIMDNKIKMVRSGVHALRQSMGNSDKQNSFTPDEIHAMLATLLGESTNGLSVPLDLNKCKNTLDIYKEADKIRDIKREESKRFFKNPFYLIGIDDYKHLLIGKFKMTVLHSDTSKMEYEIIEDFKRVRTIEEYPELVPLMTMMKVSYETKEVRRLGTLNFPIMDKYDEGLDAVFFYSGQPTNYEHSWMATPCPI
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