Scaffold Ga0334986_0052922

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0052922
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2570
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F007919	Metagenome / Metatranscriptome	342	Y
F080982	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0052922_1750_1995	F004134	GGA	MTHPTKDWDFDDTIEEAFQEWFNDLNGGFALCSEYFFGDVEIGDVNTRKDVMYKWLHSAFVMGYNMGRMEGLEVGLTNNED
Ga0334986_0052922_1992_2177	F007919	GGAG	MTNKLKFTQVSRVICPKTGVHYLDAIDENGYHWSAQQEIGVERWITYKETWKRDPQQPLD
Ga0334986_0052922_3_245	F080982	N/A	MTSQSPRIYLYKITFEEVPYYYYGVHKEKYFNDDYWGSPKTNKWCWELYTPKKQILEFFDYNGDGWMKSQEVEKRLIKPFF