Scaffold Ga0334986_0050385

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0050385
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2647
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014089	Metagenome / Metatranscriptome	266	Y
F037494	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0050385_1092_1586	F037494	N/A	MKVKPTIEDKVLAHTVALERIAQIQGHADASSRYDRELGFHDYVAQVAESIVAEILVARYLGFMDFDPRSSQFKKTADVGSFIEVKWTRYDSGQLIIYENDRQSDVAVLVVGTSPNYRLAGWIPVAMAKRPRYKHAKQPTWWVTQQNLQPIENLKGSNYGQAAL
Ga0334986_0050385_904_1095	F014089	N/A	MSDLIEILNPQTMTAKLLQNGEVIAEYKIEQCDSCAKLKKLDAFGYTKGQGGEKLTWLCGDCR