Scaffold Ga0334986_0046449

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0046449
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2780
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014590	Metagenome	261	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F068766	Metagenome	124	N
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0046449_1184_1486	F026864	N/A	VELHQPKGSNNTNYKEEKMMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLSTGQATNWRTALGEALSKIELPTDKVDKTINDVIKEGVEDEGV
Ga0334986_0046449_1830_1994	F073256	AGG	MNLQEVDTIQELKQWVEENMPGARLTEDSAGDIVIHTGLHSTMGGYLHEREEDE
Ga0334986_0046449_3_236	F014590	GGAGG	MRTRHLQLVTHEHSVTIKTRSDVSSPYGPVKAGLTTSQTTQEARLTELLNSLENVVDNLNFKSFTVYDTLVIATENLR
Ga0334986_0046449_611_865	F068766	AGGAGG	MTEDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ
Ga0334986_0046449_858_1031	F023834	GAGG	MSEPTVDYWRAKAELCRDLALIQIEDEATEKEAGMNLMRMTYALSMVDTFNEGGEDD