NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0039634

Scaffold Ga0334986_0039634


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0039634 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3057
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F004115Metagenome / Metatranscriptome452Y
F009683Metagenome / Metatranscriptome314Y
F099166Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0039634_1058_1405F004115N/AMDTPLSWLSPDFRHQKLGMTLSLTRNSNNHQWCDYCKSRWGQLKDGSWHLKAQVPAVWKVQSETPTRRTQVRFYCQPCAAEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP
Ga0334986_0039634_1389_1976F000645GGAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKPNVAAKKPIQTTSPKLAEFVKENRPNDPEPIVWDVSDVAEKLGAEIVDEIPLCNHGPMVLKSGTKEGKEYRGWVCPERDKSAQCPAKWMRIGSDGSWVFQK
Ga0334986_0039634_2601_3056F099166GGAMTIKDLSLKLAAISLLADQAKRLKDELRAELKVEMDSLGADRVKAELGDEVVAYITTTKPKFKWAIKSDRKALEWFKAYYPSEVIETIRPSSLEAILDKFNYDGDTVIDPNGEVVDWLEGSLAEPYLTTKFHGDGKAILRDALIGLKRNELD
Ga0334986_0039634_829_1140F009683GAGMSERSLSDWLSDAGDTLADRGLEYGDPRHNLLRIYKIARQLGVQLRDPADVALVFIATKLSRMVESPEREDSYLDLVGYSAILAFTRFQTPEAWDDVESDSEL
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