Scaffold Ga0334986_0034123

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0034123
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3341
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F021097	Metagenome	220	Y
F035274	Metagenome	172	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0034123_1545_1817	F035274	N/A	MLTIGRDEIDNAISLFKIDHYYIECKKDVCYLQWVATTEQAREYIDAYLECLDVLIDGQWIDTYGSHEQGTYVSLPDQDYIACRYILATI
Ga0334986_0034123_1893_2132	F003687	GGAG	MTPKAVEQLLTQDARLLARRDSPAIDQEIEEQRQAALQLFFQWQDGLAQFQDLVPFCVLLQHKVDLNRDLLRWERRHED
Ga0334986_0034123_2233_2448	F021097	AGG	MQRNYQRNYFSDACVAILCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSFLGDTYFCINSKYMN
Ga0334986_0034123_664_888	F059883	N/A	MGALMDQTEDNKRYHLIITVDEKYAIVNALAFYHAHHTLGALMDEDEREQYMLAFQEDGSTFVDSLATKVANTF