NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0031873

Scaffold Ga0334986_0031873


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0031873 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3474
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059636Metagenome / Metatranscriptome133N
F068768Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0031873_2903_3472F068768AGGAMSNLWVNVNELGSTYAESQYSYDAVKTASYLLWGMSGRKYTGVTTVTERYVSSYDPYIRTGASMLTYSPTLVRGNVENIRLNGSGPYQQDDFSGDGTSASTRVRLRGRKVIRVHTLRDRDGNVIDPRDYYLVEHSTILATPGASWTSSNIEVTYSYGTPPPLAGKAAARLLAIELVKLYENDDTCALPQR
Ga0334986_0031873_845_1723F059636GAGMAFRGVFEAPMVMGSNFGLLGCVKAQTNLDEDQWVRGFSQYWDSGIYSSKNWDDTDTTSYTIASNATPARYLEVKPFFIEVEDYRSTLGLLGIDHIERIRRQLECITQKALETELWDGAIRIGEEHSNRALVDPAATILNSGTALSPRRALALLEQSIGEASACGIQGVIHMTRDVAALAAGSNLIYPSVESDDTFLRTVGGTPVVIGSGYSGAGPTDAAENTETPTATNKWMYATGDVRVILGDIDVVNDNLAQGYDVSGNANNMLLKAIRPAAVYFDSSVHLAIRVDLTA
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