Scaffold Ga0334986_0031202

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334986_0031202

Scaffold Ga0334986_0031202

Overview

Basic Information
Taxon OID	3300034012 Open in IMG/M
Scaffold ID	Ga0334986_0031202 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3519
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F024784	Metagenome	204	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0031202_2350_2712	F093530	N/A	MRNAYASHTDFGFLRGVILENPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVDKFYKVTQDKLVILGNGIEGLKDYIDAWYQSSNNYV
Ga0334986_0031202_2717_2869	F002037	GAGG	MSKIYWIFITVLAALAIWGTENAIGQTTTILAPDGSVTVCQVYNGTVICV
Ga0334986_0031202_3144_3260	F024784	GGAG	MARAEKILDVIVWLLIVGGIGWFFYGCYQLIDLFFLRG
Ga0334986_0031202_3236_3499	F011384	N/A	MYTKLDDQRQAKFVINYVAEHPGCSIKEIVQECVIARTRLKYLESQGYLILPKWTYSNELDKRFKNRKYVSVTVGREYGRWQEQKRY

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